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RNAi Experiment: Cenix:196-g8 Ace View of Cenix:196-g8
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C36A4.6 (cyp-25A4)
Description of "C36A4.6"  Associated GO Term : monooxygenase activity
KOG Annotation  Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:3850523..3850654)
Transcript overlap: 132 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 111
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.555
Wormbase (BLAST) RNAi primary
External "C36A4.6" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F42A6.4 (cyp-25A5)
Description of "F42A6.4"  Associated GO Term : monooxygenase activity
KOG Annotation  Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:3328115..3328246)
Transcript overlap: 132 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 89
Relative score: 0.802 (Best raw score= for Gene )
Specificity index: 0.445
Wormbase (BLAST) RNAi primary
External "F42A6.4" Links  Wormbase NCBI Phenobank 1 2
Cenix:196-g8 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:196-g8 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:196-g8 (PCR_reagent)
Remark  Wildtype results in all three tests.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F42A6.4 Browse using GBrowse
Gene Graph
Gene Plot of C36A4.6 Browse using GBrowse
Gene Graph