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RNAi Experiment: Cenix:198-f7 Ace View of Cenix:198-f7
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F07B7.6
Description of "F07B7.6"  Associated GO Term : aspartic-type endopeptidase activity
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (V:8845622..8845771)
Transcript overlap: 150 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 129
Specificity index: 0.5
Wormbase (BLAST) RNAi primary
External "F07B7.6" Links  Wormbase NCBI Phenobank 1 2 3
Gene Inhibited  K06C4.14
Description of "K06C4.14"  Associated GO Term : DNA binding
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (V:8887717..8887866)
Transcript overlap: 150 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 129
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.5
Wormbase (BLAST) RNAi primary
External "K06C4.14" Links  Wormbase NCBI Phenobank 1 2 3
Cenix:198-f7 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:198-f7 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:198-f7 (PCR_reagent)
Remark  3/3 tests are wildtype
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F07B7.6 Browse using GBrowse
Gene Graph
Gene Plot of K06C4.14 Browse using GBrowse
Gene Graph