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RNAi Experiment: Cenix:199-h11 Ace View of Cenix:199-h11
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  T06A10.2
Description of "T06A10.2"  Associated GO Term : structural constituent of ribosome
KOG Annotation  60S ribosomal protein L29
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top85_percentile_ePCR (IV:16895895..16896044)
Transcript overlap: 140 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 119
Relative score: 0.922 (Best raw score= for Gene )
Specificity index: 0.48
Wormbase (BLAST) RNAi primary
External "T06A10.2" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y49E10.2
Description of "Y49E10.2"  This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
KOG Annotation  Glutaredoxin-related protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top85_percentile_ePCR (III:12372591..12372740)
Transcript overlap: 146 nt
Explain types of evidence for RNAi inhibition
Wormbase (BLAST) RNAi primary
External "Y49E10.2" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y37H9A.5
Evidence for Inhibition 
Sliding Window Raw score: 129
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.52
Wormbase (BLAST) RNAi primary
External "Y37H9A.5" Links  Wormbase NCBI Phenobank 1 2
Cenix:199-h11 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Cenix:199-h11 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:199-h11 (PCR_reagent)
Remark  60% embryonic lethality in one of the tests. Escapers develop normally.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y37H9A.5 Browse using GBrowse
Gene Graph
Gene Plot of T06A10.2 Browse using GBrowse
Gene Graph
Gene Plot of Y49E10.2 Browse using GBrowse
Gene Graph