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RNAi Experiment: Cenix:200-a6 Ace View of Cenix:200-a6
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F43G6.1 (dna-2)
Description of "F43G6.1"  dna-2 encodes the C. elegans ortholog of the yeast and vertebrate Dna2 replication helicases; by homology, DNA-2 is predicted to function as an endonuclease and an ATP-dependent helicase that is involved in DNA replication and repair; in C. elegans, DNA-2 activity is required maternally and zygotically to maintain normal rates of cell division and for proper germ-line, embryonic, and larval development; DNA-2 activity is temperature-sensitive: animals lacking DNA-2 at 16 degrees Celsius (C) are less severely affected than those at 20 or 25 degrees C; in the hermaphrodite gonad, DNA-2 localizes to nuclei of germ cells and developing oocytes, and expression continues in embryos up to the comma stage; DNA-2 then reappears at the L3 larval stage, and in L3 and L4 larvae is visible in the proliferating somatic cells of the uterus and spermatheca.
KOG Annotation  DNA replication helicase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:11780470..11781170)
Transcript overlap: 598 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 535
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "F43G6.1" Links  Wormbase NCBI Phenobank 1 2
Cenix:200-a6 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:200-a6 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:200-a6 (PCR_reagent)
Remark  3/3 tests are wildtype.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F43G6.1 Browse using GBrowse
Gene Graph