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RNAi Experiment: Cenix:201-a12 Ace View of Cenix:201-a12
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  K12D12.1
Description of "K12D12.1"  This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
KOG Annotation  DNA topoisomerase type II
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:11874990..11876377)
Transcript overlap: 1170 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1086
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.646
Wormbase (BLAST) RNAi primary
External "K12D12.1" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  K08E5.1
Evidence for Inhibition 
Sliding Window Raw score: 225
Relative score: 0.207 (Best raw score= for Gene )
Specificity index: 0.134
Wormbase (BLAST) RNAi secondary
External "K08E5.1" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F32A11.4
Description of "F32A11.4"  This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
KOG Annotation  DNA topoisomerase type II
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 197
Relative score: 0.181 (Best raw score= for Gene )
Specificity index: 0.117
Wormbase (BLAST) RNAi secondary
External "F32A11.4" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F32A11.5
Description of "F32A11.5"  This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
Evidence for Inhibition 
Sliding Window Raw score: 173
Relative score: 0.159 (Best raw score= for Gene )
Specificity index: 0.103
External "F32A11.5" Links  Wormbase NCBI Phenobank 1
Cenix:201-a12 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  Sister Chromatid Separation abnormal (Cross-eyed)
External Movies 
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hosting these data.)
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Help
Cenix:201-a12 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:201-a12 (PCR_reagent)
Remark  early embryonic: Sister Chromatid Separation (Cross-eyed)
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of K08E5.1 Browse using GBrowse
Gene Graph
Gene Plot of K12D12.1 Browse using GBrowse
Gene Graph
Gene Plot of F32A11.4 Browse using GBrowse
Gene Graph
Gene Plot of F32A11.5 Browse using GBrowse
Gene Graph