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RNAi Experiment: Cenix:201-b12 Ace View of Cenix:201-b12
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  K12D12.3 (col-84)
Description of "K12D12.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (II:11868364..11869730)
Transcript overlap: 1044 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 939
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.883
Wormbase (BLAST) RNAi primary
External "K12D12.3" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  K12D12.2 (npp-3)
Description of "K12D12.2"  npp-3 encodes a predicted nucleoporin that is a homolog of vertebrate Nup205, and is required for normal nuclear pore complex distribution in the nuclear envelope, affects nuclear exclusion of large non-nuclear macromolecules, chromatin condensation, early embryonic viability, body integrity and locomotion.
KOG Annotation  Uncharacterized conserved protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (II:11868364..11869730)
Transcript overlap: 124 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 124
Relative score: 0.132 (Best raw score= for Gene )
Specificity index: 0.117
Wormbase (BLAST) RNAi primary
External "K12D12.2" Links  Wormbase NCBI Phenobank 1 2
Cenix:201-b12 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  Sister Chromatid Separation abnormal (Cross-eyed)
External Movies 
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hosting these data.)
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Cenix:201-b12 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:201-b12 (PCR_reagent)
Remark  early embryonic: Sister Chromatid Separation (Cross-eyed)
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of K12D12.3 Browse using GBrowse
Gene Graph
Gene Plot of K12D12.2 Browse using GBrowse
Gene Graph