Link to F21H12.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to ZK675.1.1Link to ZK675.1.2Link to ZK675.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F21H12.4geneMap Link to Y49A3A.1Link to Y49A3A.2.2Link to Y49A3A.2.1Link to Y49A3A.2.3Link to Y49A3A.2.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y49A3A.1geneMap Link to H09I01.1Link to K07H8.7RNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Cenix:204-f6 Ace View of Cenix:204-f6
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F21H12.3
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:6082461..6083498)
Transcript overlap: 189 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 105
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.285
Wormbase (BLAST) RNAi primary
External "F21H12.3" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  ZK675.1 (ptc-1)
Description of "ZK675.1"  ptc-1 is orthologous to Drosophila patched and human PTC; mutation of human PTC leads to nevoid basal cell carcinoma syndrome (OMIM:109400).
KOG Annotation  Membrane protein Patched/PTCH
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 84
Relative score: 0.8 (Best raw score= for Gene )
Specificity index: 0.228
Wormbase (BLAST) RNAi secondary
External "ZK675.1" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  Y49A3A.1
Description of "Y49A3A.1"  Associated GO Term : phospholipid biosynthesis
KOG Annotation  sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 90
Specificity index: 0.244
External "Y49A3A.1" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  H09I01.1
Evidence for Inhibition 
Sliding Window Raw score: 90
Relative score: 0.857 (Best raw score= for Gene )
Specificity index: 0.244
External "H09I01.1" Links  Wormbase NCBI Phenobank 1
Cenix:204-f6 Phenotypes Help with Phenotypes
Phenotype  WT
External Movies 
(Please note that RNAiDB is not
hosting these data.)
/static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif
Help
Cenix:204-f6 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:204-f6 (PCR_reagent)
Remark  early embryonic: No significant defects.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of ZK675.1 Browse using GBrowse
Gene Graph
Gene Plot of Y49A3A.1 Browse using GBrowse
Gene Graph
Gene Plot of H09I01.1 Browse using GBrowse
Gene Graph
Gene Plot of F21H12.3 Browse using GBrowse
Gene Graph