Link to F59E12.5a.1Link to F59E12.5bLink to F59E12.5a.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F59E12.4bLink to F59E12.4aLink to C40H5.6geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F59E12.5bLink to F59E12.5a.1Link to F59E12.4aLink to F59E12.4bLink to F59E12.5a.2geneMap Link to F59E12.4aLink to F59E12.4bRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F59E12.5bLink to F59E12.5a.2Link to F59E12.5a.1Link to C40H5.6geneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Cenix:205-a7 Ace View of Cenix:205-a7
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F59E12.5
KOG Annotation  Nuclear pore complex, rNpl4 component (sc Npl4)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:5623765..5624653)
Transcript overlap: 818 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 734
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.476
External "F59E12.5" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  C40H5.6
Evidence for Inhibition 
Sliding Window Raw score: 83
Relative score: 0.121 (Best raw score= for Gene )
Specificity index: 0.058
Wormbase (BLAST) RNAi primary
External "C40H5.6" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F59E12.4
KOG Annotation  Nuclear pore complex, rNpl4 component (sc Npl4)
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 719
Relative score: 0.978 (Best raw score= for Gene )
Specificity index: 0.466
Wormbase (BLAST) RNAi primary
External "F59E12.4" Links  Wormbase NCBI Phenobank 1 2
Cenix:205-a7 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  WT_postembryonic_morphology
External Movies 
(Please note that RNAiDB is not
hosting these data.)
/static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif
Help
Cenix:205-a7 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:205-a7 (PCR_reagent)
Remark  early embryonic: No significant defects.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F59E12.5 Browse using GBrowse
Gene Graph
Gene Plot of F59E12.4 Browse using GBrowse
Gene Graph
Gene Plot of C40H5.6 Browse using GBrowse
Gene Graph