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RNAi Experiment: Cenix:211-h7 Ace View of Cenix:211-h7
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  T06D8.7
KOG Annotation  Predicted membrane protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (II:11236694..11237471)
Transcript overlap: 420 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 357
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.817
Wormbase (BLAST) RNAi primary
External "T06D8.7" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  T06D8.8 (rpn-9)
Description of "T06D8.8"  rpn-9 is predicted to encode a non-ATPase subunit of the 19S regulatory complex of the proteasome that that affects body morphology, embryonic viability, locomotion, larval viability, fertility, and growth; interacts with RPN-11 in yeast two-hybrid assays.
KOG Annotation  26S proteasome regulatory complex, subunit RPN9/PSMD13
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (II:11236694..11237471)
Transcript overlap: 101 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 80
Relative score: 0.224 (Best raw score= for Gene )
Specificity index: 0.183
External "T06D8.8" Links  Wormbase NCBI Phenobank 1
Cenix:211-h7 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:211-h7 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:211-h7 (PCR_reagent)
Remark  Wildtype results in all three tests.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of T06D8.7 Browse using GBrowse
Gene Graph
Gene Plot of T06D8.8 Browse using GBrowse
Gene Graph