Link to Y38C1AB.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y38C1AB.5geneMap Link to Y38C1AB.5RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y38C1AB.1geneMap
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RNAi Experiment: Cenix:213-d12 Ace View of Cenix:213-d12
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y38C1AB.1
Evidence for Inhibition 
ePCR Status: Top85_percentile_ePCR (IV:38118..38267)
Transcript overlap: 116 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 116
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.598
Wormbase (BLAST) RNAi primary
External "Y38C1AB.1" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y38C1AB.5
KOG Annotation  Galactosyltransferases
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:9612..9761)
Transcript overlap: 120 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 78
Relative score: 0.672 (Best raw score= for Gene )
Specificity index: 0.402
External "Y38C1AB.5" Links  Wormbase NCBI Phenobank 1 2
Cenix:213-d12 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:213-d12 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:213-d12 (PCR_reagent)
Remark  Wildtype results in all three tests.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y38C1AB.1 Browse using GBrowse
Gene Graph
Gene Plot of Y38C1AB.5 Browse using GBrowse
Gene Graph