Link to F54H12.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to C06G3.12geneMap Link to Y57G11C.19RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Cenix:215-h2 Ace View of Cenix:215-h2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F54H12.3
Description of "F54H12.3"  Associated GO Term : DNA binding
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:7960813..7960962)
Transcript overlap: 150 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 85
Relative score: 0.659 (Best raw score= for Gene )
Specificity index: 0.397
Wormbase (BLAST) RNAi primary
External "F54H12.3" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y57G11C.19
Description of "Y57G11C.19"  Associated GO Term : chromatin binding
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:14839565..14839714)
Transcript overlap: 150 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 129
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.603
Wormbase (BLAST) RNAi primary
External "Y57G11C.19" Links  Wormbase NCBI Phenobank 1 2
Cenix:215-h2 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:215-h2 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:215-h2 (PCR_reagent)
Remark  Wildtype results in all three tests.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F54H12.3 Browse using GBrowse
Gene Graph
Gene Plot of Y57G11C.19 Browse using GBrowse
Gene Graph