Link to C07D8.3Link to C07D8.2RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to K09E3.1RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F07B7.6Link to C40A11.9geneMap
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RNAi Experiment: Cenix:218-d7 Ace View of Cenix:218-d7
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C07D8.2
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (X:7362469..7362593)
Transcript overlap: 125 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 104
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "C07D8.2" Links  Wormbase NCBI Phenobank 1 2 3
Gene Inhibited  K09E3.1
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (X:17126482..17126606)
Transcript overlap: 125 nt
Explain types of evidence for RNAi inhibition
Wormbase (BLAST) RNAi primary
External "K09E3.1" Links  Wormbase NCBI Phenobank 1 2 3
Cenix:218-d7 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:218-d7 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:218-d7 (PCR_reagent)
Remark  Wildtype results in all three tests.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of C07D8.2 Browse using GBrowse
Gene Graph
Gene Plot of K09E3.1 Browse using GBrowse
Gene Graph