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RNAi Experiment: Cenix:219-e10 Ace View of Cenix:219-e10
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F08G2.1 (his-44)
Description of "F08G2.1"  his-44 encodes an H2B histone.
Evidence for Inhibition 
ePCR Status: Best_ePCR (II:13826756..13826880)
Transcript overlap: 125 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 104
Specificity index: 0.333
Wormbase (BLAST) RNAi primary
External "F08G2.1" Links  Wormbase NCBI Phenobank 1 2 3
Gene Inhibited  ZK131.5 (his-11)
Description of "ZK131.5"  his-11 encodes an H2B histone; by homology, HIS-11 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-11 is a replication-dependent histone locus that resides in the HIS3 cluster on chromosome II.
Evidence for Inhibition 
ePCR Status: Best_ePCR (II:13821825..13821949)
Transcript overlap: 125 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 104
Specificity index: 0.333
Wormbase (BLAST) RNAi primary
External "ZK131.5" Links  Wormbase NCBI Phenobank 1 2 3
Gene Inhibited  ZK131.9 (his-15)
Description of "ZK131.9"  his-15 encodes an H2B histone.
Evidence for Inhibition 
ePCR Status: Best_ePCR (II:13818387..13818511)
Transcript overlap: 125 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 104
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.333
External "ZK131.9" Links  Wormbase NCBI Phenobank 1 2 3
Cenix:219-e10 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  Sister Chromatid Separation abnormal (Cross-eyed)
External Movies 
(Please note that RNAiDB is not
hosting these data.)
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Help
Cenix:219-e10 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:219-e10 (PCR_reagent)
Remark  early embryonic: Sister Chromatid Separation (Cross-eyed)
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F08G2.1 Browse using GBrowse
Gene Graph
Gene Plot of ZK131.5 Browse using GBrowse
Gene Graph
Gene Plot of ZK131.9 Browse using GBrowse
Gene Graph