Link to B0035.8RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to ZK131.5geneMap Link to F54E12.4Link to F54E12.5RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to H02I12.6Link to H02I12.7RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Cenix:221-e5 Ace View of Cenix:221-e5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  B0035.8 (his-48)
Description of "B0035.8"  his-48 encodes an H2B histone; by homology, HIS-48 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-48 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV.
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:11324840..11324957)
Transcript overlap: 118 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 97
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.393
Wormbase (BLAST) RNAi primary
External "B0035.8" Links  Wormbase NCBI Phenobank 1 2 3
Gene Inhibited  F54E12.4 (his-58)
Description of "F54E12.4"  his-58 encodes an H2B histone.
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:11339836..11339953)
Transcript overlap: 118 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 75
Specificity index: 0.304
Wormbase (BLAST) RNAi primary
External "F54E12.4" Links  Wormbase NCBI Phenobank 1 2 3
Gene Inhibited  H02I12.6 (his-66)
Description of "H02I12.6"  his-66 encodes an H2B histone.
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:11400516..11400633)
Transcript overlap: 118 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 75
Relative score: 0.773 (Best raw score= for Gene )
Specificity index: 0.304
Wormbase (BLAST) RNAi primary
External "H02I12.6" Links  Wormbase NCBI Phenobank 1 2 3
Cenix:221-e5 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  Sister Chromatid Separation abnormal (Cross-eyed)
External Movies 
(Please note that RNAiDB is not
hosting these data.)
/static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif
Help
Cenix:221-e5 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:221-e5 (PCR_reagent)
Remark  early embryonic: Sister Chromatid Separation (Cross-eyed)
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F54E12.4 Browse using GBrowse
Gene Graph
Gene Plot of H02I12.6 Browse using GBrowse
Gene Graph
Gene Plot of B0035.8 Browse using GBrowse
Gene Graph