Link to Y46B2A.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F33H12.6Link to F59H6.5Link to ZK250.9Link to Y16E11A.2Link to ZK250.10Link to Y53F4B.7Link to Y53F4B.26geneMap RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F33H12.6Link to ZK250.9Link to F59H6.5Link to Y46B2A.2Link to Y16E11A.2geneMap Link to F59H6.5RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y53F4B.7Link to ZK250.9Link to Y16E11A.2Link to Y53F4B.26Link to F33H12.6Link to Y46B2A.2Link to ZK250.10geneMap Link to F33H12.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to ZK250.9Link to F59H6.5Link to Y46B2A.2Link to ZK250.10Link to Y16E11A.2geneMap Link to Y16E11A.2RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F33H12.6Link to F59H6.5Link to ZK250.9Link to Y46B2A.2Link to ZK250.10Link to Y53F4B.7Link to Y53F4B.26geneMap Link to ZK250.9RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F33H12.6Link to F59H6.5Link to Y46B2A.2Link to Y16E11A.2Link to ZK250.10Link to Y53F4B.7Link to Y53F4B.26geneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Cenix:235-f11 Ace View of Cenix:235-f11
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y46B2A.2
KOG Annotation  DNA helicase PIF1/RRM3
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:852709..852858)
Transcript overlap: 150 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 108
Relative score: 0.75 (Best raw score= for Gene )
Specificity index: 0.145
Wormbase (BLAST) RNAi primary
External "Y46B2A.2" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  ZK250.10
Evidence for Inhibition 
Sliding Window Raw score: 123
Specificity index: 0.165
External "ZK250.10" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F59H6.5
KOG Annotation  DNA helicase PIF1/RRM3
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 123
Specificity index: 0.165
External "F59H6.5" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F33H12.6
KOG Annotation  DNA helicase PIF1/RRM3
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 144
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.194
External "F33H12.6" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  Y16E11A.2
KOG Annotation  DNA helicase PIF1/RRM3
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 123
Specificity index: 0.165
External "Y16E11A.2" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  ZK250.9
Evidence for Inhibition 
Sliding Window Raw score: 123
Relative score: 0.854 (Best raw score= for Gene )
Specificity index: 0.165
External "ZK250.9" Links  Wormbase NCBI Phenobank 1
Cenix:235-f11 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:235-f11 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:235-f11 (PCR_reagent)
Remark  Wildtype results in all three tests.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of ZK250.10 Browse using GBrowse
Gene Graph
Gene Plot of F33H12.6 Browse using GBrowse
Gene Graph
Gene Plot of F59H6.5 Browse using GBrowse
Gene Graph
Gene Plot of Y16E11A.2 Browse using GBrowse
Gene Graph
Gene Plot of Y46B2A.2 Browse using GBrowse
Gene Graph
Gene Plot of ZK250.9 Browse using GBrowse
Gene Graph