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RNAi Experiment: Cenix:237-d9 Ace View of Cenix:237-d9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  ZK546.3
Description of "ZK546.3"  Associated GO Term : structural molecule activity
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:4939936..4940082)
Transcript overlap: 147 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 105
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.568
Wormbase (BLAST) RNAi primary
External "ZK546.3" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F59A6.8 (msp-71)
Description of "F59A6.8"  msp-71 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes.
Evidence for Inhibition 
Sliding Window Raw score: 80
Relative score: 0.762 (Best raw score= for Gene )
Specificity index: 0.432
Wormbase (BLAST) RNAi primary
External "F59A6.8" Links  Wormbase NCBI Phenobank 1
Cenix:237-d9 Phenotypes Help with Phenotypes
Phenotype  WT
External Movies 
(Please note that RNAiDB is not
hosting these data.)
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Cenix:237-d9 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:237-d9 (PCR_reagent)
Remark  early embryonic: No significant defects.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of ZK546.3 Browse using GBrowse
Gene Graph
Gene Plot of F59A6.8 Browse using GBrowse
Gene Graph