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RNAi Experiment: Cenix:242-a4 Ace View of Cenix:242-a4
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F54A5.3
Description of "F54A5.3"  F54A5.3 encodes four proteins by multiple splicing, three of which are rather small (52-81 residues); however, one isoform (F54A5.3A, 316 residues) is a ortholog of vertebrate Shc proteins (e.g., p52/p46SHC and p66SHC); like its orthologs, F54A5.3A has a PTB and an SH2 domain in N- to C-terminal order; F54A5.3 has no obvious function in mass RNAi assays, but might be involved in RAS signal transduction or regulation of apoptosis.
KOG Annotation  Adaptor protein SHC and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:971717..972092)
Transcript overlap: 372 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 331
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "F54A5.3" Links  Wormbase NCBI Phenobank 1 2 3
Cenix:242-a4 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:242-a4 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:242-a4 (PCR_reagent)
Remark  3/3 tests are wildtype
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F54A5.3 Browse using GBrowse
Gene Graph