| RNAi Experiment: Cenix:242-d4 |
Ace View of Cenix:242-d4
|
| Genes Inhibited |
 |
| Gene Inhibited |
F54E12.3 (his-56) |
| Description of "F54E12.3" |
his-56 encodes an H4 histone. |
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (IV:11338282..11338716)
Transcript overlap: 224 nt |
|
| Sliding Window |
Raw score: 182
Relative score: 0.897 (Best raw score= for Gene )
Specificity index: 0.252 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F54E12.3" Links |
   1 |
| Gene Inhibited |
B0035.9 (his-46) |
| Description of "B0035.9" |
his-46 encodes an H4 histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 203
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.281 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "B0035.9" Links |
1 |
| Gene Inhibited |
F17E9.12 (his-31) |
| Description of "F17E9.12" |
his-31 encodes an H4 histone; his-31 is contained within the histone gene cluster HIS5. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 75
Relative score: 0.369 (Best raw score= for Gene )
Specificity index: 0.104 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F17E9.12" Links |
1 |
| Gene Inhibited |
F55G1.11 (his-60) |
| Description of "F55G1.11" |
his-60 encodes an H4 histone; by homology, HIS-60 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-60 expression is detected in early embryos, beginning at the 28-cell stage and continuing through the comma stage (early morphogenesis); his-60 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. |
| KOG Annotation |
Histone H4
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 61
Relative score: 0.3 (Best raw score= for Gene )
Specificity index: 0.084 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F55G1.11" Links |
1 |
| Gene Inhibited |
F22B3.1 (his-64) |
| Description of "F22B3.1" |
his-64 encodes an H4 histone. |
| KOG Annotation |
Histone H4
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 202
Relative score: 0.995 (Best raw score= for Gene )
Specificity index: 0.279 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F22B3.1" Links |
1 |
| Cenix:242-d4 Phenotypes |
|
|
| Embryonic |
Emb Penetrance None reported |
| Phenotype |
WT_postembryonic_morphology
|
External Movies
(Please note that RNAiDB is not
hosting these data.) |
|
|
| Cenix:242-d4 Experiment Details |
Ace View |
| Laboratory |
TH |
| RNAi Reagent & Type |
Cenix:242-d4 (PCR_reagent) |
| Remark |
early embryonic: No significant defects. |
| Reference |
Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...." |
| Delivery Method |
Injection |
| Date |
2005-3-24 |
| Gene Plot of F54E12.3 |
Browse using GBrowse
|
 |
| Gene Plot of B0035.9 |
Browse using GBrowse
|
 |
| Gene Plot of F17E9.12 |
Browse using GBrowse
|
 |
| Gene Plot of F22B3.1 |
Browse using GBrowse
|
 |
| Gene Plot of F55G1.11 |
Browse using GBrowse
|
 |
![Adult](JavaScript:void
window.open("/cgi-bin/rnaidb/popUpImage.cgi?imgName=N2wormfinal.png",
"RNAiDB Help","toolbar=no, location=no, directories=no,
status=no, menubar=no, scrollbars=yes, resizable=no,
copyhistory=no, width=1000, height=550"))
