Link to Y11D7A.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to K09H9.4RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y113G7A.2Link to F52E1.12Link to Y60A3A.11geneMap Link to M110.5a.1Link to M110.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F52E1.5aLink to F52E1.5bRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y113G7A.2Link to Y11D7A.6Link to Y60A3A.11Link to K09H9.4Link to M110.6geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
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RNAi Experiment: Cenix:242-d9 Ace View of Cenix:242-d9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y11D7A.6
KOG Annotation  Reverse transcriptase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:9246225..9246639)
Transcript overlap: 362 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 341
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.289
Wormbase (BLAST) RNAi primary
External "Y11D7A.6" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  K09H9.4
Description of "K09H9.4"  Associated GO Term : RNA binding
Evidence for Inhibition 
Sliding Window Raw score: 104
Relative score: 0.305 (Best raw score= for Gene )
Specificity index: 0.088
Wormbase (BLAST) RNAi secondary
External "K09H9.4" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  M110.6
Description of "M110.6"  Associated GO Term : RNA binding
KOG Annotation  Reverse transcriptase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 105
Relative score: 0.308 (Best raw score= for Gene )
Specificity index: 0.089
Wormbase (BLAST) RNAi secondary
External "M110.6" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F52E1.12
Evidence for Inhibition 
Sliding Window Raw score: 264
Relative score: 0.774 (Best raw score= for Gene )
Specificity index: 0.224
Wormbase (BLAST) RNAi primary
External "F52E1.12" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  Y113G7A.2
Evidence for Inhibition 
Sliding Window Raw score: 287
Relative score: 0.842 (Best raw score= for Gene )
Specificity index: 0.244
Wormbase (BLAST) RNAi primary
External "Y113G7A.2" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  Y60A3A.11
Evidence for Inhibition 
Sliding Window Raw score: 77
Relative score: 0.226 (Best raw score= for Gene )
Specificity index: 0.065
Wormbase (BLAST) RNAi secondary
External "Y60A3A.11" Links  Wormbase NCBI Phenobank 1
Cenix:242-d9 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:242-d9 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:242-d9 (PCR_reagent)
Remark  Wildtype results in all three tests.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of K09H9.4 Browse using GBrowse
Gene Graph
Gene Plot of M110.6 Browse using GBrowse
Gene Graph
Gene Plot of F52E1.12 Browse using GBrowse
Gene Graph
Gene Plot of Y113G7A.2 Browse using GBrowse
Gene Graph
Gene Plot of Y60A3A.11 Browse using GBrowse
Gene Graph
Gene Plot of Y11D7A.6 Browse using GBrowse
Gene Graph