| RNAi Experiment: Cenix:242-e3 |
Ace View of Cenix:242-e3
|
| Genes Inhibited |
 |
| Gene Inhibited |
F45F2.12 (his-8) |
| Description of "F45F2.12" |
his-8 encodes an H2B histone; his-8 is contained within the histone gene cluster HIS2. |
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (V:8535321..8535760)
Transcript overlap: 355 nt |
|
| Sliding Window |
Raw score: 313
Relative score: 0.994 (Best raw score= for Gene )
Specificity index: 0.145 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F45F2.12" Links |
   1 |
| Gene Inhibited |
F17E9.9 (his-34) |
| Description of "F17E9.9" |
his-34 encodes an H2B histone; his-34 is contained within the histone gene cluster HIS5. |
| KOG Annotation |
Histone H2B
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 75
Specificity index: 0.035 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F17E9.9" Links |
1 |
| Gene Inhibited |
F35H10.11 (his-29) |
| Description of "F35H10.11" |
his-29 encodes an H2B histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 75
Relative score: 0.238 (Best raw score= for Gene )
Specificity index: 0.035 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F35H10.11" Links |
1 |
| Gene Inhibited |
C50F4.5 (his-41) |
| Description of "C50F4.5" |
his-41 encodes an H2B histone. |
| KOG Annotation |
Histone H2B
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 97
Relative score: 0.308 (Best raw score= for Gene )
Specificity index: 0.045 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "C50F4.5" Links |
1 |
| Gene Inhibited |
F07B7.11 (his-54) |
| Description of "F07B7.11" |
his-54 encodes an H2B histone; by homology, HIS-54 is predicted to function as a nucleosome component required for packaging of DNA into chromatin. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 315
Specificity index: 0.146 |
|
| External "F07B7.11" Links |
1 |
| Gene Inhibited |
F45F2.2 (his-39) |
| Description of "F45F2.2" |
his-39 encodes an H2B histone; by homology, HIS-39 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; loss of his-39 function via RNA-mediated interference (RNAi) does not result in any abnormalities; his-39 is a replication-dependent histone locus that resides in the HIS2 cluster on chromosome V. |
| KOG Annotation |
Histone H2B
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 134
Relative score: 0.425 (Best raw score= for Gene )
Specificity index: 0.062 |
|
| External "F45F2.2" Links |
1 |
| Gene Inhibited |
F07B7.4 (his-52) |
| Description of "F07B7.4" |
his-52 encodes an H2B histone. |
| KOG Annotation |
Histone H2B
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 315
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.146 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F07B7.4" Links |
1 |
| Gene Inhibited |
K06C4.4 (his-20) |
| Description of "K06C4.4" |
his-20 encodes an H2B histone; by homology, HIS-20 is predicted to function as a nucleosome component required for packaging of DNA into chromatin. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 290
Specificity index: 0.135 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "K06C4.4" Links |
1 |
| Gene Inhibited |
K06C4.12 (his-22) |
| Description of "K06C4.12" |
his-22 encodes an H2B histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 290
Relative score: 0.921 (Best raw score= for Gene )
Specificity index: 0.135 |
|
| External "K06C4.12" Links |
1 |
| Gene Inhibited |
T10C6.11 (his-4) |
| Description of "T10C6.11" |
his-4 encodes an H2B histone. |
| KOG Annotation |
Histone H2B
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 252
Relative score: 0.8 (Best raw score= for Gene )
Specificity index: 0.117 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T10C6.11" Links |
1 |
| Cenix:242-e3 Phenotypes |
|
|
| Embryonic |
Emb Penetrance None reported |
| Phenotype |
Sister Chromatid Separation abnormal (Cross-eyed)
|
External Movies
(Please note that RNAiDB is not
hosting these data.) |
|
|
| Cenix:242-e3 Experiment Details |
Ace View |
| Laboratory |
TH |
| RNAi Reagent & Type |
Cenix:242-e3 (PCR_reagent) |
| Remark |
early embryonic: Sister Chromatid Separation (Cross-eyed) |
| Reference |
Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...." |
| Delivery Method |
Injection |
| Date |
2005-3-24 |
| Gene Plot of F17E9.9 |
Browse using GBrowse
|
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| Gene Plot of F35H10.11 |
Browse using GBrowse
|
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| Gene Plot of C50F4.5 |
Browse using GBrowse
|
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| Gene Plot of F45F2.12 |
Browse using GBrowse
|
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| Gene Plot of F07B7.11 |
Browse using GBrowse
|
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| Gene Plot of F45F2.2 |
Browse using GBrowse
|
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| Gene Plot of F07B7.4 |
Browse using GBrowse
|
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| Gene Plot of K06C4.4 |
Browse using GBrowse
|
 |
| Gene Plot of T10C6.11 |
Browse using GBrowse
|
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| Gene Plot of K06C4.12 |
Browse using GBrowse
|
 |
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