| RNAi Experiment: Cenix:242-e4 |
Ace View of Cenix:242-e4
|
| Genes Inhibited |
 |
| Gene Inhibited |
F54E12.5 (his-57) |
| Description of "F54E12.5" |
his-57 encodes an H2A histone. |
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (IV:11340429..11340845)
Transcript overlap: 338 nt |
|
| Sliding Window |
Raw score: 296
Relative score: 0.934 (Best raw score= for Gene )
Specificity index: 0.2 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F54E12.5" Links |
   1 |
| Gene Inhibited |
F17E9.13 (his-33) |
| Description of "F17E9.13" |
his-33 encodes an H2A histone; by homology, HIS-33 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-33 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 67
Specificity index: 0.045 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F17E9.13" Links |
1 |
| Gene Inhibited |
B0035.7 (his-47) |
| Description of "B0035.7" |
his-47 encodes an H2A histone; by homology, HIS-47 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-47 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 317
Specificity index: 0.214 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "B0035.7" Links |
1 |
| Gene Inhibited |
F08G2.2 (his-43) |
| Description of "F08G2.2" |
his-43 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 89
Relative score: 0.281 (Best raw score= for Gene )
Specificity index: 0.06 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F08G2.2" Links |
1 |
| Gene Inhibited |
ZK131.10 (his-16) |
| Description of "ZK131.10" |
his-16 encodes an H2A histone; his-16 is contained within the histone gene cluster HIS3. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 68
Relative score: 0.215 (Best raw score= for Gene )
Specificity index: 0.046 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "ZK131.10" Links |
1 |
| Gene Inhibited |
F55G1.10 (his-61) |
| Description of "F55G1.10" |
his-61 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 152
Relative score: 0.479 (Best raw score= for Gene )
Specificity index: 0.103 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F55G1.10" Links |
1 |
| Gene Inhibited |
T23D8.6 (his-68) |
| Description of "T23D8.6" |
his-68 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 107
Relative score: 0.338 (Best raw score= for Gene )
Specificity index: 0.072 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T23D8.6" Links |
1 |
| Gene Inhibited |
H02I12.7 (his-65) |
| Description of "H02I12.7" |
his-65 encodes an H2A histone. |
| KOG Annotation |
Histone 2A
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 317
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.214 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "H02I12.7" Links |
1 |
| Gene Inhibited |
F35H10.1 (his-30) |
| Description of "F35H10.1" |
his-30 encodes an H2A histone; by homology, HIS-30 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-30 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 67
Relative score: 0.211 (Best raw score= for Gene )
Specificity index: 0.045 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F35H10.1" Links |
1 |
| Cenix:242-e4 Phenotypes |
|
|
| Embryonic |
Emb Penetrance None reported |
| Phenotype |
Sister Chromatid Separation abnormal (Cross-eyed)
|
External Movies
(Please note that RNAiDB is not
hosting these data.) |
|
|
| Cenix:242-e4 Experiment Details |
Ace View |
| Laboratory |
TH |
| RNAi Reagent & Type |
Cenix:242-e4 (PCR_reagent) |
| Remark |
early embryonic: Sister Chromatid Separation (Cross-eyed) |
| Reference |
Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...." |
| Delivery Method |
Injection |
| Date |
2005-3-24 |
| Gene Plot of F17E9.13 |
Browse using GBrowse
|
 |
| Gene Plot of B0035.7 |
Browse using GBrowse
|
 |
| Gene Plot of F08G2.2 |
Browse using GBrowse
|
 |
| Gene Plot of ZK131.10 |
Browse using GBrowse
|
 |
| Gene Plot of F55G1.10 |
Browse using GBrowse
|
 |
| Gene Plot of T23D8.6 |
Browse using GBrowse
|
 |
| Gene Plot of F54E12.5 |
Browse using GBrowse
|
 |
| Gene Plot of H02I12.7 |
Browse using GBrowse
|
 |
| Gene Plot of F35H10.1 |
Browse using GBrowse
|
 |
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