| RNAi Experiment: Cenix:242-e7 |
Ace View of Cenix:242-e7
|
| Genes Inhibited |
 |
| Gene Inhibited |
T10C6.12 (his-3) |
| Description of "T10C6.12" |
his-3 encodes an H2A histone; by homology, HIS-3 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-3 is a replication-dependent histone locus that resides in the HIS1 cluster on chromosome V. |
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (V:16043242..16043675)
Transcript overlap: 297 nt |
|
| Sliding Window |
Raw score: 276
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.21 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T10C6.12" Links |
   1 |
| Gene Inhibited |
F45F2.4 (his-7) |
| Description of "F45F2.4" |
his-7 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 195
Relative score: 0.707 (Best raw score= for Gene )
Specificity index: 0.149 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F45F2.4" Links |
1 |
| Gene Inhibited |
F07B7.10 (his-51) |
| Description of "F07B7.10" |
his-51 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 151
Specificity index: 0.115 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F07B7.10" Links |
1 |
| Gene Inhibited |
F07B7.3 (his-53) |
| Description of "F07B7.3" |
his-53 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 151
Specificity index: 0.115 |
|
| External "F07B7.3" Links |
1 |
| Gene Inhibited |
K06C4.3 (his-21) |
| Description of "K06C4.3" |
his-21 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 151
Relative score: 0.547 (Best raw score= for Gene )
Specificity index: 0.115 |
|
| External "K06C4.3" Links |
1 |
| Gene Inhibited |
F08G2.2 (his-43) |
| Description of "F08G2.2" |
his-43 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 109
Specificity index: 0.083 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F08G2.2" Links |
1 |
| Gene Inhibited |
ZK131.10 (his-16) |
| Description of "ZK131.10" |
his-16 encodes an H2A histone; his-16 is contained within the histone gene cluster HIS3. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 88
Relative score: 0.319 (Best raw score= for Gene )
Specificity index: 0.067 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "ZK131.10" Links |
1 |
| Gene Inhibited |
ZK131.6 (his-12) |
| Description of "ZK131.6" |
his-12 encodes an H2A histone; his-12 is contained within the histone gene cluster HIS3. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 82
Relative score: 0.297 (Best raw score= for Gene )
Specificity index: 0.062 |
|
| External "ZK131.6" Links |
1 |
| Gene Inhibited |
K06C4.11 (his-19) |
| Description of "K06C4.11" |
his-19 encodes an H2A histone; his-19 is contained within the histone gene cluster HIS4. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 109
Relative score: 0.395 (Best raw score= for Gene )
Specificity index: 0.083 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "K06C4.11" Links |
1 |
| Cenix:242-e7 Phenotypes |
|
|
| Embryonic |
Emb Penetrance None reported |
| Phenotype |
Sister Chromatid Separation abnormal (Cross-eyed)
|
External Movies
(Please note that RNAiDB is not
hosting these data.) |
|
|
| Cenix:242-e7 Experiment Details |
Ace View |
| Laboratory |
TH |
| RNAi Reagent & Type |
Cenix:242-e7 (PCR_reagent) |
| Remark |
early embryonic: Sister Chromatid Separation (Cross-eyed) |
| Reference |
Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...." |
| Delivery Method |
Injection |
| Date |
2005-3-24 |
| Gene Plot of F07B7.10 |
Browse using GBrowse
|
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| Gene Plot of F45F2.4 |
Browse using GBrowse
|
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| Gene Plot of F08G2.2 |
Browse using GBrowse
|
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| Gene Plot of K06C4.3 |
Browse using GBrowse
|
 |
| Gene Plot of F07B7.3 |
Browse using GBrowse
|
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| Gene Plot of ZK131.10 |
Browse using GBrowse
|
 |
| Gene Plot of T10C6.12 |
Browse using GBrowse
|
 |
| Gene Plot of ZK131.6 |
Browse using GBrowse
|
 |
| Gene Plot of K06C4.11 |
Browse using GBrowse
|
 |
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