RNAi Experiment: Cenix:242-f8 |
Ace View of Cenix:242-f8
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Genes Inhibited |
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Gene Inhibited |
T28C6.4 (col-117) |
Description of "T28C6.4" |
Associated GO Term : structural constituent of cuticle |
Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (IV:8822916..8823337)
Transcript overlap: 396 nt |
|
Sliding Window |
Raw score: 357
Relative score: 0.992 (Best raw score= for Gene )
Specificity index: 0.156 |
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External "T28C6.4" Links |
1 |
Gene Inhibited |
T15B7.3 (col-143) |
Description of "T15B7.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 360
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.157 |
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External "T15B7.3" Links |
1 |
Gene Inhibited |
B0222.8 (col-10) |
Description of "B0222.8" |
col-10 encodes a collagen protein; expressed exclusively in hypodermal cells |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 240
Specificity index: 0.105 |
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External "B0222.8" Links |
1 |
Gene Inhibited |
W05B2.6 (col-92) |
Description of "W05B2.6" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 101
Specificity index: 0.044 |
|
External "W05B2.6" Links |
1 |
Gene Inhibited |
T28C6.6 (col-3) |
Description of "T28C6.6" |
col-3 encodes a collagen protein that affects body morphogenesis, larval viability, and locomotion in large scale RNAi screens; mRNA is expressed during all developmental stages examined (in embryos, during the L2 to dauer molt, during the dauer to L4 larval molt, and during the L4 to adult molt). |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 354
Relative score: 0.983 (Best raw score= for Gene )
Specificity index: 0.155 |
Wormbase (BLAST) |
RNAi primary |
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External "T28C6.6" Links |
1 |
Gene Inhibited |
W05B2.5 (col-93) |
Description of "W05B2.5" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 83
Relative score: 0.231 (Best raw score= for Gene )
Specificity index: 0.036 |
|
External "W05B2.5" Links |
1 |
Gene Inhibited |
W05B2.1 (col-94) |
Description of "W05B2.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 101
Relative score: 0.281 (Best raw score= for Gene )
Specificity index: 0.044 |
|
External "W05B2.1" Links |
1 |
Gene Inhibited |
B0222.6 (col-144) |
Description of "B0222.6" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 240
Relative score: 0.667 (Best raw score= for Gene )
Specificity index: 0.105 |
|
External "B0222.6" Links |
1 |
Gene Inhibited |
F11G11.10 (col-17) |
Description of "F11G11.10" |
col-17 encodes a collagen which is expressed in all developmental stages except eggs, like col-15, col-16, and col-20; collagen genes with this expression pattern may be used for synthesis of cuticles after the L1 stage (e.g., the L4 cuticle). |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 175
Relative score: 0.486 (Best raw score= for Gene )
Specificity index: 0.077 |
|
External "F11G11.10" Links |
1 |
Gene Inhibited |
C29F4.1 (col-125) |
Description of "C29F4.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 276
Relative score: 0.767 (Best raw score= for Gene )
Specificity index: 0.121 |
Wormbase (BLAST) |
RNAi primary |
|
External "C29F4.1" Links |
1 |
Cenix:242-f8 Phenotypes |
|
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Phenotype |
Larval Lethal-Early (L1/L2)
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Cenix:242-f8 Experiment Details |
Ace View |
Laboratory |
TH |
RNAi Reagent & Type |
Cenix:242-f8 (PCR_reagent) |
Remark |
post-embryonic: Larval Lethal-Early (L1/L2) |
Reference |
Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...." |
Delivery Method |
Injection |
Date |
2005-3-24 |
Gene Plot of T15B7.3 |
Browse using GBrowse
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Gene Plot of T28C6.4 |
Browse using GBrowse
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Gene Plot of B0222.8 |
Browse using GBrowse
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Gene Plot of W05B2.6 |
Browse using GBrowse
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Gene Plot of T28C6.6 |
Browse using GBrowse
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Gene Plot of W05B2.5 |
Browse using GBrowse
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Gene Plot of W05B2.1 |
Browse using GBrowse
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Gene Plot of B0222.6 |
Browse using GBrowse
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Gene Plot of F11G11.10 |
Browse using GBrowse
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Gene Plot of C29F4.1 |
Browse using GBrowse
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