RNAi Experiment: Cenix:242-h4 |
Ace View of Cenix:242-h4
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Genes Inhibited |
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Gene Inhibited |
H02I12.7 (his-65) |
Description of "H02I12.7" |
his-65 encodes an H2A histone. |
KOG Annotation  |
Histone 2A
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Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (IV:11401214..11401625)
Transcript overlap: 233 nt |
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Sliding Window |
Raw score: 191
Relative score: 0.901 (Best raw score= for Gene )
Specificity index: 0.248 |
Wormbase (BLAST) |
RNAi primary |
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External "H02I12.7" Links |
1 |
Gene Inhibited |
F54E12.5 (his-57) |
Description of "F54E12.5" |
his-57 encodes an H2A histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 212
Specificity index: 0.275 |
Wormbase (BLAST) |
RNAi primary |
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External "F54E12.5" Links |
1 |
Gene Inhibited |
B0035.7 (his-47) |
Description of "B0035.7" |
his-47 encodes an H2A histone; by homology, HIS-47 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-47 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. |
Evidence for Inhibition |
Sliding Window |
Raw score: 212
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.275 |
Wormbase (BLAST) |
RNAi primary |
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External "B0035.7" Links |
1 |
Gene Inhibited |
F08G2.2 (his-43) |
Description of "F08G2.2" |
his-43 encodes an H2A histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 61
Relative score: 0.288 (Best raw score= for Gene )
Specificity index: 0.079 |
Wormbase (BLAST) |
RNAi secondary |
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External "F08G2.2" Links |
1 |
Gene Inhibited |
F55G1.10 (his-61) |
Description of "F55G1.10" |
his-61 encodes an H2A histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 95
Relative score: 0.448 (Best raw score= for Gene )
Specificity index: 0.123 |
Wormbase (BLAST) |
RNAi secondary |
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External "F55G1.10" Links |
1 |
Cenix:242-h4 Phenotypes |
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Embryonic |
Emb Penetrance None reported |
Phenotype |
Sister Chromatid Separation abnormal (Cross-eyed)
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External Movies (Please note that RNAiDB is not hosting these data.) |
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Cenix:242-h4 Experiment Details |
Ace View |
Laboratory |
TH |
RNAi Reagent & Type |
Cenix:242-h4 (PCR_reagent) |
Remark |
early embryonic: Sister Chromatid Separation (Cross-eyed) |
Reference |
Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...." |
Delivery Method |
Injection |
Date |
2005-3-24 |
Gene Plot of B0035.7 |
Browse using GBrowse
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Gene Plot of F54E12.5 |
Browse using GBrowse
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Gene Plot of H02I12.7 |
Browse using GBrowse
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Gene Plot of F08G2.2 |
Browse using GBrowse
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Gene Plot of F55G1.10 |
Browse using GBrowse
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