RNAi Experiment: Cenix:243-g11 |
Ace View of Cenix:243-g11
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Genes Inhibited |
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Gene Inhibited |
F15H10.2 (col-13) |
Description of "F15H10.2" |
col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (V:10424151..10424463)
Transcript overlap: 261 nt |
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Sliding Window |
Raw score: 177
Relative score: 0.816 (Best raw score= for Gene )
Specificity index: 0.449 |
Wormbase (BLAST) |
RNAi primary |
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External "F15H10.2" Links |
1 |
Gene Inhibited |
F15H10.1 (col-12) |
Description of "F15H10.1" |
col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
Sliding Window |
Raw score: 217
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.551 |
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External "F15H10.1" Links |
1 |
Cenix:243-g11 Phenotypes |
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Phenotype |
WT
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Cenix:243-g11 Experiment Details |
Ace View |
Laboratory |
TH |
RNAi Reagent & Type |
Cenix:243-g11 (PCR_reagent) |
Remark |
3/3 tests are wildtype |
Reference |
Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...." |
Delivery Method |
Injection |
Date |
2005-3-24 |
Gene Plot of F15H10.1 |
Browse using GBrowse
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Gene Plot of F15H10.2 |
Browse using GBrowse
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