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RNAi Experiment: Cenix:245-g8 Ace View of Cenix:245-g8
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y73B6BL.38
Description of "Y73B6BL.38"  Associated GO Term : binding
KOG Annotation  Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:6422375..6422719)
Transcript overlap: 345 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 282
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.766
Wormbase (BLAST) RNAi primary
External "Y73B6BL.38" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  Y45F10A.2 (puf-3)
Description of "Y45F10A.2"  The puf-3 gene encodes a predicted RNA binding protein that is a member of the conserved PUF (Pumilio and FBF) family of RNA binding proteins; PUF-3 is expressed in the ovary and is required for multiple aspects of early embryogenesis including proper cell cycle timing, spindle positioning, and formation of the polar bodies and pronuclei.
KOG Annotation  Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily)
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 86
Relative score: 0.305 (Best raw score= for Gene )
Specificity index: 0.234
Wormbase (BLAST) RNAi secondary
External "Y45F10A.2" Links  Wormbase NCBI Phenobank 1
Cenix:245-g8 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  Severe Pleiotropic Defects
External Movies 
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hosting these data.)
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Cenix:245-g8 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:245-g8 (PCR_reagent)
Remark  early embryonic: Severe Pleiotropic Defects
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y45F10A.2 Browse using GBrowse
Gene Graph
Gene Plot of Y73B6BL.38 Browse using GBrowse
Gene Graph