| RNAi Experiment: Cenix:26-g12 |
Ace View of Cenix:26-g12
|
| Genes Inhibited |
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| Gene Inhibited |
C09G5.4 (col-39) |
| Description of "C09G5.4" |
col-39 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-39 are most closely related to those of COL-8, COL-19, and COL-35. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (II:10705099..10705856)
Transcript overlap: 758 nt |
|
| Sliding Window |
Raw score: 716
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.278 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "C09G5.4" Links |
   1 |
| Gene Inhibited |
ZK1193.1 (col-19) |
| Description of "ZK1193.1" |
col-19 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) that is required for normal structure of the alae; expressed during the L2-to-dauer and L4-to-adult molts with strongest expression in adult animals. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 379
Relative score: 0.529 (Best raw score= for Gene )
Specificity index: 0.147 |
|
| External "ZK1193.1" Links |
1 |
| Gene Inhibited |
W01B6.7 (col-2) |
| Description of "W01B6.7" |
col-2 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expression peaks during the molt that separates the L2 larval and dauer stages as the dauer cuticle is being formed, and mRNA is expressed at low levels in post-dauer L4 larvae and in adult animals. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 66
Relative score: 0.092 (Best raw score= for Gene )
Specificity index: 0.026 |
|
| External "W01B6.7" Links |
1 |
| Gene Inhibited |
T11B7.3 (col-118) |
| Description of "T11B7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 101
Relative score: 0.141 (Best raw score= for Gene )
Specificity index: 0.039 |
|
| External "T11B7.3" Links |
1 |
| Gene Inhibited |
Y2H9A.3 (col-162) |
| Description of "Y2H9A.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 61
Relative score: 0.085 (Best raw score= for Gene )
Specificity index: 0.024 |
|
| External "Y2H9A.3" Links |
1 |
| Gene Inhibited |
F57B7.3 (col-156) |
| Description of "F57B7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 302
Specificity index: 0.117 |
|
| External "F57B7.3" Links |
1 |
| Gene Inhibited |
T21B4.2 (col-85) |
| Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 319
Relative score: 0.446 (Best raw score= for Gene )
Specificity index: 0.124 |
|
| External "T21B4.2" Links |
1 |
| Gene Inhibited |
F38A3.2 (ram-2) |
| Description of "F38A3.2" |
ram-2 encodes a cuticle collagen that interacts with unc-6 to affect ray cell migration, and interacts with unc-5 and unc-6 to affect embryonic viability; also affects ray morphology in males such that the structural cells and the hypodermis of the rays are swollen in mutants. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 302
Relative score: 0.422 (Best raw score= for Gene )
Specificity index: 0.117 |
|
| External "F38A3.2" Links |
1 |
| Gene Inhibited |
H27M09.4 (dpy-14) |
| Description of "H27M09.4" |
dpy-14 encodes a type III (alpha 1) collagen that is required for embryonic, larval, and vulval development, proper amphid morphology, and regulation of body shape and size; a dpy-14 promoter-GFP fusion construct is reportedly expressed in embryonic neurons. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 328
Relative score: 0.458 (Best raw score= for Gene )
Specificity index: 0.127 |
|
| External "H27M09.4" Links |
1 |
| Cenix:26-g12 Phenotypes |
|
|
| Phenotype |
WT
|
External Movies
(Please note that RNAiDB is not
hosting these data.) |
|
|
| Cenix:26-g12 Experiment Details |
Ace View |
| Laboratory |
TH |
| RNAi Reagent & Type |
Cenix:26-g12 (PCR_reagent) |
| Remark |
early embryonic: No reproducible defects detected. |
| Reference |
Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...." |
| Delivery Method |
Injection |
| Date |
2005-3-24 |
| Gene Plot of ZK1193.1 |
Browse using GBrowse
|
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| Gene Plot of W01B6.7 |
Browse using GBrowse
|
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| Gene Plot of T11B7.3 |
Browse using GBrowse
|
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| Gene Plot of Y2H9A.3 |
Browse using GBrowse
|
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| Gene Plot of F57B7.3 |
Browse using GBrowse
|
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| Gene Plot of T21B4.2 |
Browse using GBrowse
|
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| Gene Plot of F38A3.2 |
Browse using GBrowse
|
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| Gene Plot of H27M09.4 |
Browse using GBrowse
|
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| Gene Plot of C09G5.4 |
Browse using GBrowse
|
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