Link to F18A1.4aLink to F18A1.4bLink to F18A1.3bLink to F18A1.3dLink to F18A1.3a.2Link to F18A1.3a.1Link to F18A1.3cLink to F18A1.2.2Link to F18A1.2.1Link to F18A1.2.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F18A1.3a.1Link to F18A1.3a.2Link to F18A1.3bLink to F18A1.2.2Link to F18A1.2.1Link to F18A1.2.3geneMap Link to F18A1.3bLink to F18A1.3dLink to F18A1.3a.2Link to F18A1.3a.1Link to F18A1.3cLink to F18A1.2.2Link to F18A1.2.1Link to F18A1.2.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F18A1.3a.1Link to F18A1.3a.2Link to F18A1.3bLink to F18A1.2.2Link to F18A1.2.1Link to F18A1.2.3Link to F18A1.3dgeneMap
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RNAi Experiment: Cenix:28-c5 Ace View of Cenix:28-c5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F18A1.3 (lir-1)
Description of "F18A1.3"  LIR-1 has no obvious effect on development when ectopically expressed in embryos, despite having a primary sequence closely similar to that of LIN-26.
Evidence for Inhibition 
ePCR Status: Best_ePCR (II:7681167..7681995)
Transcript overlap: 621 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 474
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.809
Wormbase (BLAST) RNAi primary
External "F18A1.3" Links  Wormbase NCBI Phenobank 1 2 3
Gene Inhibited  F18A1.2 (lin-26)
Description of "F18A1.2"  lin-26 encodes a putative C2H2 zinc finger-containing protein required for proper differentiation of ectodermal and mesodermal epithelial cells; LIN-26 is expressed in many different cell types including the rectal rep cells, the somatic gonad, glial cells, and hypodermal cells; ectopic LIN-26 expression during embryogenesis induces epithelial-like cell fates suggesting that LIN-26 is sufficient for epithelial differentiation.
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (II:7681167..7681995)
Transcript overlap: 112 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 112
Relative score: 0.236 (Best raw score= for Gene )
Specificity index: 0.191
External "F18A1.2" Links  Wormbase NCBI Phenobank 1 2 3
Cenix:28-c5 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  WT_postembryonic_morphology
External Movies 
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hosting these data.)
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Cenix:28-c5 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:28-c5 (PCR_reagent)
Remark  early embryonic: Clear cut results.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F18A1.2 Browse using GBrowse
Gene Graph
Gene Plot of F18A1.3 Browse using GBrowse
Gene Graph