Link to B0393.1.1Link to B0393.1.2Link to B0393.2.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to B0393.8RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F22D6.14Link to VB0393L.2Link to F31E3.6Link to C29A12.1geneMap Link to F22D6.7Link to F22D6.9RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F22D6.6Link to F22D6.14RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F31E3.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to B0393.8Link to VB0393L.2Link to C29A12.1Link to F22D6.14geneMap Link to VB0393L.2RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to B0393.8Link to F31E3.6Link to C29A12.1Link to F22D6.14geneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Cenix:300-b9 Ace View of Cenix:300-b9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  B0393.1 (rps-0)
Description of "B0393.1"  rps-0 encodes a small ribosomal subunit SA protein that appears to function as both a ribosomal component and a laminin receptor; by homology, RPS-0 is predicted to play roles in protein biosynthesis and cell adhesion; in C. elegans, RPS-0 activity is required for embryonic and germline development, vulval morphogenesis, and the overall health of the animal.
KOG Annotation  40S ribosomal protein SA (P40)/Laminin receptor 1
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:4752148..4754213)
Transcript overlap: 888 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 804
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.62
Wormbase (BLAST) RNAi primary
External "B0393.1" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  B0393.8
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:4752148..4754213)
Transcript overlap: 141 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 78
Relative score: 0.104 (Best raw score= for Gene )
Specificity index: 0.064
Wormbase (BLAST) RNAi primary
External "B0393.8" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F22D6.7
Evidence for Inhibition 
Sliding Window Raw score: 82
Relative score: 0.109 (Best raw score= for Gene )
Specificity index: 0.068
External "F22D6.7" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F22D6.6 (ekl-1)
Description of "F22D6.6"  Associated GO Term : nucleic acid binding
Evidence for Inhibition 
Sliding Window Raw score: 80
Relative score: 0.106 (Best raw score= for Gene )
Specificity index: 0.066
External "F22D6.6" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F31E3.6
Evidence for Inhibition 
Sliding Window Raw score: 122
Relative score: 0.162 (Best raw score= for Gene )
Specificity index: 0.101
External "F31E3.6" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  VB0393L.2
Evidence for Inhibition 
Sliding Window Raw score: 99
Relative score: 0.132 (Best raw score= for Gene )
Specificity index: 0.082
External "VB0393L.2" Links  Wormbase NCBI Phenobank 1 2
Cenix:300-b9 Phenotypes Help with Phenotypes
External Movies 
(Please note that RNAiDB is not
hosting these data.)
/static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif
Help
Cenix:300-b9 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:300-b9 (PCR_reagent)
Remark  early embryonic: Severe Pleiotropic Defects
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F22D6.7 Browse using GBrowse
Gene Graph
Gene Plot of F22D6.6 Browse using GBrowse
Gene Graph
Gene Plot of B0393.8 Browse using GBrowse
Gene Graph
Gene Plot of B0393.1 Browse using GBrowse
Gene Graph
Gene Plot of F31E3.6 Browse using GBrowse
Gene Graph
Gene Plot of VB0393L.2 Browse using GBrowse
Gene Graph