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RNAi Experiment: Cenix:300-f3 Ace View of Cenix:300-f3
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  R07E5.3
Description of "R07E5.3"  The R07E5.3 gene encodes a homolog of SNF5/Ini1, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; R07E5.3 may be involved in asymmetric cell division of the T cells.
KOG Annotation  SWI-SNF chromatin remodeling complex, Snf5 subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:4403839..4406013)
Transcript overlap: 1117 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1033
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.738
Wormbase (BLAST) RNAi primary
External "R07E5.3" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  R07E5.17
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:4403839..4406013)
Transcript overlap: 408 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 366
Relative score: 0.354 (Best raw score= for Gene )
Specificity index: 0.262
Wormbase (BLAST) RNAi primary
External "R07E5.17" Links  Wormbase NCBI Phenobank 1
Cenix:300-f3 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  WT_postembryonic_morphology
External Movies 
(Please note that RNAiDB is not
hosting these data.)
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Cenix:300-f3 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:300-f3 (PCR_reagent)
Remark  early embryonic: Clear cut.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of R07E5.17 Browse using GBrowse
Gene Graph
Gene Plot of R07E5.3 Browse using GBrowse
Gene Graph