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RNAi Experiment: Cenix:302-b5 Ace View of Cenix:302-b5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  B0280.1
Description of "B0280.1"  Associated GO Term : catalytic activity
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:7133862..7135245)
Transcript overlap: 865 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 698
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.802
Wormbase (BLAST) RNAi primary
External "B0280.1" Links  Wormbase NCBI Phenobank 1 2 3
Gene Inhibited  B0280.11
Description of "B0280.11"  Associated GO Term : nucleic acid binding
KOG Annotation  RNA-binding protein Sam68 and related KH domain proteins
Protein tyrosine phosphatase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:7133862..7135245)
Transcript overlap: 233 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 172
Relative score: 0.246 (Best raw score= for Gene )
Specificity index: 0.198
Wormbase (BLAST) RNAi primary
External "B0280.11" Links  Wormbase NCBI Phenobank 1 2 3
Cenix:302-b5 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  Osmotic Integrity defective
External Movies 
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hosting these data.)
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Cenix:302-b5 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:302-b5 (PCR_reagent)
Remark  early embryonic: Osmotic Integrity
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of B0280.11 Browse using GBrowse
Gene Graph
Gene Plot of B0280.1 Browse using GBrowse
Gene Graph