RNAi Experiment: Cenix:302-b9 |
Ace View of Cenix:302-b9
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Genes Inhibited |
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Gene Inhibited |
C29E4.1 (col-90) |
Description of "C29E4.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (III:7948155..7949843)
Transcript overlap: 978 nt |
|
Sliding Window |
Raw score: 894
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.401 |
Wormbase (BLAST) |
RNAi primary |
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External "C29E4.1" Links |
1 |
Gene Inhibited |
H06A10.2 (col-185) |
Description of "H06A10.2" |
Associated GO Term : structural constituent of cuticle |
Evidence for Inhibition |
Sliding Window |
Raw score: 81
Relative score: 0.091 (Best raw score= for Gene )
Specificity index: 0.036 |
|
External "H06A10.2" Links |
1 |
Gene Inhibited |
F15H10.1 (col-12) |
Description of "F15H10.1" |
col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 109
Relative score: 0.122 (Best raw score= for Gene )
Specificity index: 0.049 |
|
External "F15H10.1" Links |
1 |
Gene Inhibited |
K02D7.3 (col-101) |
Description of "K02D7.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 106
Relative score: 0.119 (Best raw score= for Gene )
Specificity index: 0.048 |
|
External "K02D7.3" Links |
1 |
Gene Inhibited |
Y41E3.2 (dpy-4) |
Description of "Y41E3.2" |
dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 80
Relative score: 0.089 (Best raw score= for Gene )
Specificity index: 0.036 |
|
External "Y41E3.2" Links |
1 |
Gene Inhibited |
F23H12.4 (sqt-3) |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 121
Relative score: 0.135 (Best raw score= for Gene )
Specificity index: 0.054 |
|
External "F23H12.4" Links |
1 |
Gene Inhibited |
T21B4.2 (col-85) |
Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 115
Relative score: 0.129 (Best raw score= for Gene )
Specificity index: 0.052 |
|
External "T21B4.2" Links |
1 |
Gene Inhibited |
F15H10.2 (col-13) |
Description of "F15H10.2" |
col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 88
Relative score: 0.098 (Best raw score= for Gene )
Specificity index: 0.039 |
|
External "F15H10.2" Links |
1 |
Gene Inhibited |
Y51H4A.9 (col-137) |
Description of "Y51H4A.9" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 198
Relative score: 0.221 (Best raw score= for Gene )
Specificity index: 0.089 |
|
External "Y51H4A.9" Links |
1 |
Gene Inhibited |
C18H7.3 (col-102) |
Description of "C18H7.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 436
Relative score: 0.488 (Best raw score= for Gene )
Specificity index: 0.196 |
|
External "C18H7.3" Links |
1 |
Cenix:302-b9 Phenotypes |
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Phenotype |
WT
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Cenix:302-b9 Experiment Details |
Ace View |
Laboratory |
TH |
RNAi Reagent & Type |
Cenix:302-b9 (PCR_reagent) |
Remark |
wild type |
Reference |
Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...." |
Delivery Method |
Injection |
Date |
2005-3-24 |
Gene Plot of F15H10.1 |
Browse using GBrowse
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Gene Plot of H06A10.2 |
Browse using GBrowse
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Gene Plot of Y41E3.2 |
Browse using GBrowse
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Gene Plot of K02D7.3 |
Browse using GBrowse
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Gene Plot of C29E4.1 |
Browse using GBrowse
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Gene Plot of F23H12.4 |
Browse using GBrowse
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Gene Plot of T21B4.2 |
Browse using GBrowse
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Gene Plot of Y51H4A.9 |
Browse using GBrowse
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Gene Plot of F15H10.2 |
Browse using GBrowse
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Gene Plot of C18H7.3 |
Browse using GBrowse
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