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RNAi Experiment: Cenix:302-g2 Ace View of Cenix:302-g2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  K03F8.1
Description of "K03F8.1"  Associated GO Term : RNA binding
KOG Annotation  Reverse transcriptase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:6511067..6511996)
Transcript overlap: 513 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 471
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.358
Wormbase (BLAST) RNAi primary
External "K03F8.1" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  K03F8.2 (acr-5)
Description of "K03F8.2"  acr-5 encodes a predicted member of the alpha subunit family of nicotinic acetylcholine receptors that is expressed in the nervous system.
Evidence for Inhibition 
ePCR Transcript overlap: 25 nt Explain types of evidence for RNAi inhibition
Wormbase (BLAST) RNAi primary
External "K03F8.2" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  T02E9.4
Evidence for Inhibition 
Sliding Window Raw score: 356
Relative score: 0.756 (Best raw score= for Gene )
Specificity index: 0.27
External "T02E9.4" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y45F3A.7
Evidence for Inhibition 
Sliding Window Raw score: 418
Relative score: 0.887 (Best raw score= for Gene )
Specificity index: 0.317
External "Y45F3A.7" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  K08G2.4
Evidence for Inhibition 
Sliding Window Raw score: 72
Relative score: 0.153 (Best raw score= for Gene )
Specificity index: 0.055
External "K08G2.4" Links  Wormbase NCBI Phenobank 1 2
Cenix:302-g2 Phenotypes Help with Phenotypes
Phenotype  WT
External Movies 
(Please note that RNAiDB is not
hosting these data.)
/static/images/movie.gif /static/images/movie.gif /static/images/movie.gif
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Cenix:302-g2 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:302-g2 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of K03F8.1 Browse using GBrowse
Gene Graph
Gene Plot of Y45F3A.7 Browse using GBrowse
Gene Graph
Gene Plot of T02E9.4 Browse using GBrowse
Gene Graph
Gene Plot of K08G2.4 Browse using GBrowse
Gene Graph
Gene Plot of K03F8.2 Browse using GBrowse
Gene Graph