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RNAi Experiment: Cenix:302-g5 Ace View of Cenix:302-g5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  R151.3 (rpl-6)
Description of "R151.3"  rpl-6 encodes a large ribosomal subunit L6 protein.
KOG Annotation  60s ribosomal protein L6
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:7208162..7210341)
Transcript overlap: 784 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 679
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.743
Wormbase (BLAST) RNAi primary
External "R151.3" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  R151.2
Description of "R151.2"  R151.2 is orthologous to the human gene PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE 1 (PRPS1; OMIM:311850), which when mutated leads to disease
KOG Annotation  Ribose-phosphate pyrophosphokinase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:7208162..7210341)
Transcript overlap: 235 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 235
Relative score: 0.346 (Best raw score= for Gene )
Specificity index: 0.257
Wormbase (BLAST) RNAi primary
External "R151.2" Links  Wormbase NCBI Phenobank 1
Cenix:302-g5 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  Severe Pleiotropic Defects
External Movies 
(Please note that RNAiDB is not
hosting these data.)
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Cenix:302-g5 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:302-g5 (PCR_reagent)
Remark  early embryonic: Severe Pleiotropic Defects
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of R151.3 Browse using GBrowse
Gene Graph
Gene Plot of R151.2 Browse using GBrowse
Gene Graph