Link to F54D8.2.1Link to F54D8.2.2Link to F54D8.2.3Link to F54D8.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F54D8.2.1Link to F54D8.2.2Link to F54D8.2.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to C26E6.11RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to T20B12.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F37D6.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
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RNAi Experiment: Cenix:303-f8 Ace View of Cenix:303-f8
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F54D8.4 (cah-1)
Description of "F54D8.4"  cah-1 encodes a member of the carbonic anhydrase family.
KOG Annotation  Carbonic anhydrase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:5083004..5085205)
Transcript overlap: 1055 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 908
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.754
Wormbase (BLAST) RNAi primary
External "F54D8.4" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F54D8.2
Description of "F54D8.2"  Associated GO Term : cytochrome-c oxidase activity
KOG Annotation  Cytochrome c oxidase, subunit VIa/COX13
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 6 nt Explain types of evidence for RNAi inhibition
External "F54D8.2" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  C26E6.11 (tag-339)
Evidence for Inhibition 
Sliding Window Raw score: 142
Relative score: 0.156 (Best raw score= for Gene )
Specificity index: 0.118
Wormbase (BLAST) RNAi primary
External "C26E6.11" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  T20B12.1
Description of "T20B12.1"  Associated GO Term : binding
KOG Annotation  Uncharacterized conserved protein, contains TPR repeats
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 77
Specificity index: 0.064
Wormbase (BLAST) RNAi primary
External "T20B12.1" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F37D6.1 (mus-101)
Description of "F37D6.1"  Associated GO Term : intracellular
KOG Annotation  Nucleotide excision repair factor NEF2, RAD4/CUT5 component
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 77
Relative score: 0.085 (Best raw score= for Gene )
Specificity index: 0.064
Wormbase (BLAST) RNAi primary
External "F37D6.1" Links  Wormbase NCBI Phenobank 1
Cenix:303-f8 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:303-f8 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:303-f8 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F54D8.2 Browse using GBrowse
Gene Graph
Gene Plot of C26E6.11 Browse using GBrowse
Gene Graph
Gene Plot of F54D8.4 Browse using GBrowse
Gene Graph
Gene Plot of T20B12.1 Browse using GBrowse
Gene Graph
Gene Plot of F37D6.1 Browse using GBrowse
Gene Graph