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RNAi Experiment: Cenix:305-e9 Ace View of Cenix:305-e9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F44B9.8
Description of "F44B9.8"  Associated GO Term : ATP binding
KOG Annotation  Replication factor C, subunit RFC5
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:8027703..8029301)
Transcript overlap: 1130 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1067
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.866
Wormbase (BLAST) RNAi primary
External "F44B9.8" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F44B9.7 (pqn-38)
Description of "F44B9.7"  The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
KOG Annotation  Replication factor C, subunit RFC5
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:8027703..8029301)
Transcript overlap: 186 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 165
Relative score: 0.155 (Best raw score= for Gene )
Specificity index: 0.134
Wormbase (BLAST) RNAi primary
External "F44B9.7" Links  Wormbase NCBI Phenobank 1 2
Cenix:305-e9 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  Pace of P-Lineage abnormal
External Movies 
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hosting these data.)
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Cenix:305-e9 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:305-e9 (PCR_reagent)
Remark  early embryonic: Pace of P-Lineage
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F44B9.8 Browse using GBrowse
Gene Graph
Gene Plot of F44B9.7 Browse using GBrowse
Gene Graph