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RNAi Experiment: Cenix:306-b9 Ace View of Cenix:306-b9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C05D11.5
KOG Annotation  Hydroxypyruvate isomerase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:6410009..6411923)
Transcript overlap: 817 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 712
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.66
Wormbase (BLAST) RNAi primary
External "C05D11.5" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  C05D11.6 (nas-4)
Description of "C05D11.6"  nas-4 encodes a predicted extracellular matrix metalloprotease of the M12A (astacin) family that contains an N-terminal signal sequence and a catalytic domain, but no recognizable regulatory domains in the C-terminus; as loss of nas-4 activity via RNAi results in no obvious abnormalities, the precise role of NAS-4 in C. elegans development and/or behavior is not yet known; however, an NAS-4 translational reporter is expressed in the pharynx and intestine in larvae and adults, suggesting a role for NAS-4 in digestion; NAS-4 is specifically detected within cells of the pharyngeal procorpus, metacorpus, isthmus, and terminal bulb, with extracellular expression detected in the lumen of the terminal bulb and in the gut.
KOG Annotation  Meprin A metalloprotease
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:6410009..6411923)
Transcript overlap: 388 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 367
Relative score: 0.515 (Best raw score= for Gene )
Specificity index: 0.34
External "C05D11.6" Links  Wormbase NCBI Phenobank 1
Cenix:306-b9 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:306-b9 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:306-b9 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of C05D11.6 Browse using GBrowse
Gene Graph
Gene Plot of C05D11.5 Browse using GBrowse
Gene Graph