| RNAi Experiment: Cenix:307-f1 |
Ace View of Cenix:307-f1
|
| Genes Inhibited |
 |
| Gene Inhibited |
F09G8.6 (col-91) |
| Description of "F09G8.6" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (III:8262367..8263354)
Transcript overlap: 710 nt |
|
| Sliding Window |
Raw score: 649
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.471 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F09G8.6" Links |
   1 |
| Gene Inhibited |
T21B4.2 (col-85) |
| Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 130
Relative score: 0.2 (Best raw score= for Gene )
Specificity index: 0.094 |
|
| External "T21B4.2" Links |
1 |
| Gene Inhibited |
EGAP7.1 (dpy-3) |
| Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 375
Relative score: 0.578 (Best raw score= for Gene )
Specificity index: 0.272 |
|
| External "EGAP7.1" Links |
1 |
| Gene Inhibited |
C09G5.5 (col-80) |
| Description of "C09G5.5" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 225
Relative score: 0.347 (Best raw score= for Gene )
Specificity index: 0.163 |
|
| External "C09G5.5" Links |
1 |
| Cenix:307-f1 Phenotypes |
|
|
| Phenotype |
WT
|
| Cenix:307-f1 Experiment Details |
Ace View |
| Laboratory |
TH |
| RNAi Reagent & Type |
Cenix:307-f1 (PCR_reagent) |
| Remark |
wild type |
| Reference |
Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...." |
| Delivery Method |
Injection |
| Date |
2005-3-24 |
| Gene Plot of T21B4.2 |
Browse using GBrowse
|
 |
| Gene Plot of F09G8.6 |
Browse using GBrowse
|
 |
| Gene Plot of C09G5.5 |
Browse using GBrowse
|
 |
| Gene Plot of EGAP7.1 |
Browse using GBrowse
|
 |
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