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RNAi Experiment: Cenix:308-f1 Ace View of Cenix:308-f1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F43C1.3
KOG Annotation  Predicted Zn-finger protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:4242497..4244587)
Transcript overlap: 657 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 636
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.539
Wormbase (BLAST) RNAi primary
External "F43C1.3" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F43C1.6
Description of "F43C1.6"  Associated GO Term : RNA binding
KOG Annotation  Mitochondrial/chloroplast ribosomal L21 protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top85_percentile_ePCR (III:4242497..4244587)
Transcript overlap: 614 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 551
Relative score: 0.855 (Best raw score= for Gene )
Specificity index: 0.461
Wormbase (BLAST) RNAi primary
External "F43C1.6" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F43C1.7
Evidence for Inhibition 
ePCR Transcript overlap: 29 nt Explain types of evidence for RNAi inhibition
Wormbase (BLAST) RNAi primary
External "F43C1.7" Links  Wormbase NCBI Phenobank 1
Cenix:308-f1 Phenotypes Help with Phenotypes
Phenotype  WT
External Movies 
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Cenix:308-f1 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:308-f1 (PCR_reagent)
Remark  early embryonic: No significant defects. 1/5 embryos is slightly smaller than normal.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F43C1.6 Browse using GBrowse
Gene Graph
Gene Plot of F43C1.7 Browse using GBrowse
Gene Graph
Gene Plot of F43C1.3 Browse using GBrowse
Gene Graph