Link to R05D3.5RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to ZC262.1Link to F38H4.6geneMap Link to ZC262.1RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to R05D3.5Link to F38H4.6geneMap Link to K09H9.4RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y113G7A.2Link to F52E1.12Link to Y60A3A.11geneMap Link to F38H4.6Link to F38H4.4RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to ZC262.1Link to R05D3.5geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y11D7A.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to M110.5a.1Link to M110.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F52E1.5aLink to F52E1.5bRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y113G7A.2Link to Y11D7A.6Link to Y60A3A.11Link to K09H9.4Link to M110.6geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Cenix:309-d8 Ace View of Cenix:309-d8
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  R05D3.5
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:8347915..8350070)
Transcript overlap: 183 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 141
Relative score: 0.792 (Best raw score= for Gene )
Specificity index: 0.127
Wormbase (BLAST) RNAi primary
External "R05D3.5" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  ZC262.1
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:8339720..8341875)
Transcript overlap: 183 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 141
Specificity index: 0.127
Wormbase (BLAST) RNAi primary
External "ZC262.1" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  K09H9.4
Description of "K09H9.4"  Associated GO Term : RNA binding
Evidence for Inhibition 
Sliding Window Raw score: 97
Relative score: 0.545 (Best raw score= for Gene )
Specificity index: 0.087
Wormbase (BLAST) RNAi secondary
External "K09H9.4" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F38H4.6
Description of "F38H4.6"  Associated GO Term : structural molecule activity
KOG Annotation  VAMP-associated protein involved in inositol metabolism
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 162
Relative score: 0.91 (Best raw score= for Gene )
Specificity index: 0.146
Wormbase (BLAST) RNAi secondary
External "F38H4.6" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y60A3A.11
Evidence for Inhibition 
Sliding Window Raw score: 87
Relative score: 0.489 (Best raw score= for Gene )
Specificity index: 0.078
Wormbase (BLAST) RNAi secondary
External "Y60A3A.11" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y11D7A.6
KOG Annotation  Reverse transcriptase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 92
Relative score: 0.517 (Best raw score= for Gene )
Specificity index: 0.083
Wormbase (BLAST) RNAi primary
External "Y11D7A.6" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  M110.6
Description of "M110.6"  Associated GO Term : RNA binding
KOG Annotation  Reverse transcriptase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 99
Relative score: 0.556 (Best raw score= for Gene )
Specificity index: 0.089
Wormbase (BLAST) RNAi secondary
External "M110.6" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F52E1.12
Evidence for Inhibition 
Sliding Window Raw score: 112
Relative score: 0.629 (Best raw score= for Gene )
Specificity index: 0.101
Wormbase (BLAST) RNAi primary
External "F52E1.12" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y113G7A.2
Evidence for Inhibition 
Sliding Window Raw score: 178
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.161
Wormbase (BLAST) RNAi primary
External "Y113G7A.2" Links  Wormbase NCBI Phenobank 1 2
Cenix:309-d8 Phenotypes Help with Phenotypes
Phenotype  WT
External Movies 
(Please note that RNAiDB is not
hosting these data.)
/static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif
Help
Cenix:309-d8 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:309-d8 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of K09H9.4 Browse using GBrowse
Gene Graph
Gene Plot of ZC262.1 Browse using GBrowse
Gene Graph
Gene Plot of M110.6 Browse using GBrowse
Gene Graph
Gene Plot of F38H4.6 Browse using GBrowse
Gene Graph
Gene Plot of F52E1.12 Browse using GBrowse
Gene Graph
Gene Plot of Y113G7A.2 Browse using GBrowse
Gene Graph
Gene Plot of Y11D7A.6 Browse using GBrowse
Gene Graph
Gene Plot of Y60A3A.11 Browse using GBrowse
Gene Graph
Gene Plot of R05D3.5 Browse using GBrowse
Gene Graph