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RNAi Experiment: Cenix:309-h9 Ace View of Cenix:309-h9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C06G4.2 (clp-1)
Description of "C06G4.2"  clp-1 encodes a calpain homolog that has significant identity to mammalian calpains over its whole length and that contains motifs typical of calpains, including a thiol (cysteine) protease active site and a Ca[2+]-binding domain; CLP-1 is required, in parallel with TRA-3 but in series with ASP-3 and ASP-3, for degenerative (necrotic-like) cell death in neurons induced by mutations such as mec-4(d), deg-3(d), or gsa-1(gf).
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:7980907..7981581)
Transcript overlap: 342 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 279
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "C06G4.2" Links  Wormbase NCBI Phenobank 1 2 3 4
Cenix:309-h9 Phenotypes Help with Phenotypes
Phenotype  WT
External Movies 
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Cenix:309-h9 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:309-h9 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of C06G4.2 Browse using GBrowse
Gene Graph