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RNAi Experiment: Cenix:310-f8 Ace View of Cenix:310-f8
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  ZC395.7 (hap-1)
Description of "ZC395.7"  Associated GO Term : hydrolase activity
KOG Annotation  Inosine triphosphate pyrophosphatase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:5263526..5264923)
Transcript overlap: 625 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 499
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.668
Wormbase (BLAST) RNAi primary
External "ZC395.7" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  C34E10.1 (gop-3)
Description of "C34E10.1"  gop-3 encodes an ortholog of the mammalian CGI-51 (comparative gene identification-51) proteins that display a high degree of similarity to the Haemophilus influenza D15 protective surface antigen; loss of gop-3 activity via large-scale RNAi screens indicates that GOP-3 is required for embryonic and larval development, as well as for normal postembryonic growth rates.
KOG Annotation  Predicted cell surface protein homologous to bacterial outer membrane proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:5263526..5264923)
Transcript overlap: 269 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 248
Relative score: 0.497 (Best raw score= for Gene )
Specificity index: 0.332
Wormbase (BLAST) RNAi primary
External "C34E10.1" Links  Wormbase NCBI Phenobank 1 2
Cenix:310-f8 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:310-f8 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:310-f8 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of C34E10.1 Browse using GBrowse
Gene Graph
Gene Plot of ZC395.7 Browse using GBrowse
Gene Graph