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RNAi Experiment: Cenix:313-g1 Ace View of Cenix:313-g1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  R07E5.3
Description of "R07E5.3"  The R07E5.3 gene encodes a homolog of SNF5/Ini1, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; R07E5.3 may be involved in asymmetric cell division of the T cells.
KOG Annotation  SWI-SNF chromatin remodeling complex, Snf5 subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:4406187..4407106)
Transcript overlap: 563 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 479
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.522
External "R07E5.3" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  R07E5.14 (rnp-4)
Description of "R07E5.14"  rnp-4 encodes a putative member of the exon-exon junction complex, orthologous to Y14 in S. cerevisiae and TSUNAGI in D. melanogaster; RNP-4 is required for embryonic viability, fertility, vulval development, and cuticular integrity; however, rnp-4(RNAi) animals show no accumulation of poly(A)+ mRNA in their nuclei, indicating that RNP-4 is dispensable for mRNA export.
KOG Annotation  RNA-binding protein RBM8/Tsunagi (RRM superfamily)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top85_percentile_ePCR (III:4406187..4407106)
Transcript overlap: 501 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 438
Relative score: 0.914 (Best raw score= for Gene )
Specificity index: 0.478
Wormbase (BLAST) RNAi primary
External "R07E5.14" Links  Wormbase NCBI Phenobank 1
Cenix:313-g1 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:313-g1 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:313-g1 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of R07E5.14 Browse using GBrowse
Gene Graph
Gene Plot of R07E5.3 Browse using GBrowse
Gene Graph