| RNAi Experiment: Cenix:320-d6 |
Ace View of Cenix:320-d6
|
| Genes Inhibited |
 |
| Gene Inhibited |
F14F7.1 (col-98) |
| Description of "F14F7.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (III:13018598..13019796)
Transcript overlap: 965 nt |
|
| Sliding Window |
Raw score: 904
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.288 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F14F7.1" Links |
   1 |
| Gene Inhibited |
H06A10.2 (col-185) |
| Description of "H06A10.2" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 199
Relative score: 0.22 (Best raw score= for Gene )
Specificity index: 0.063 |
|
| External "H06A10.2" Links |
1 |
| Gene Inhibited |
Y54E10BL.2 (col-48) |
| Description of "Y54E10BL.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 263
Relative score: 0.291 (Best raw score= for Gene )
Specificity index: 0.084 |
|
| External "Y54E10BL.2" Links |
1 |
| Gene Inhibited |
EGAP7.1 (dpy-3) |
| Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 378
Relative score: 0.418 (Best raw score= for Gene )
Specificity index: 0.12 |
|
| External "EGAP7.1" Links |
1 |
| Gene Inhibited |
ZC513.8 (col-43) |
| Description of "ZC513.8" |
col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 73
Relative score: 0.081 (Best raw score= for Gene )
Specificity index: 0.023 |
|
| External "ZC513.8" Links |
1 |
| Gene Inhibited |
F08G5.4 (col-130) |
| Description of "F08G5.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 229
Relative score: 0.253 (Best raw score= for Gene )
Specificity index: 0.073 |
|
| External "F08G5.4" Links |
1 |
| Gene Inhibited |
F23H12.4 (sqt-3) |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 139
Relative score: 0.154 (Best raw score= for Gene )
Specificity index: 0.044 |
|
| External "F23H12.4" Links |
1 |
| Gene Inhibited |
F38A3.2 (ram-2) |
| Description of "F38A3.2" |
ram-2 encodes a cuticle collagen that interacts with unc-6 to affect ray cell migration, and interacts with unc-5 and unc-6 to affect embryonic viability; also affects ray morphology in males such that the structural cells and the hypodermis of the rays are swollen in mutants. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 102
Relative score: 0.113 (Best raw score= for Gene )
Specificity index: 0.032 |
|
| External "F38A3.2" Links |
1 |
| Gene Inhibited |
F54B11.2 (col-44) |
| Description of "F54B11.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 306
Relative score: 0.338 (Best raw score= for Gene )
Specificity index: 0.097 |
|
| External "F54B11.2" Links |
1 |
| Gene Inhibited |
T15B7.4 (col-142) |
| Description of "T15B7.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 351
Relative score: 0.388 (Best raw score= for Gene )
Specificity index: 0.112 |
|
| External "T15B7.4" Links |
1 |
| Gene Inhibited |
C09G5.5 (col-80) |
| Description of "C09G5.5" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 197
Relative score: 0.218 (Best raw score= for Gene )
Specificity index: 0.063 |
|
| External "C09G5.5" Links |
1 |
| Cenix:320-d6 Phenotypes |
|
|
| Phenotype |
WT
|
External Movies
(Please note that RNAiDB is not
hosting these data.) |
|
|
| Cenix:320-d6 Experiment Details |
Ace View |
| Laboratory |
TH |
| RNAi Reagent & Type |
Cenix:320-d6 (PCR_reagent) |
| Remark |
early embryonic: No significant defects. |
| Reference |
Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...." |
| Delivery Method |
Injection |
| Date |
2005-3-24 |
| Gene Plot of H06A10.2 |
Browse using GBrowse
|
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| Gene Plot of Y54E10BL.2 |
Browse using GBrowse
|
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| Gene Plot of F08G5.4 |
Browse using GBrowse
|
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| Gene Plot of ZC513.8 |
Browse using GBrowse
|
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| Gene Plot of EGAP7.1 |
Browse using GBrowse
|
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| Gene Plot of F14F7.1 |
Browse using GBrowse
|
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| Gene Plot of F23H12.4 |
Browse using GBrowse
|
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| Gene Plot of F38A3.2 |
Browse using GBrowse
|
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| Gene Plot of F54B11.2 |
Browse using GBrowse
|
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| Gene Plot of T15B7.4 |
Browse using GBrowse
|
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| Gene Plot of C09G5.5 |
Browse using GBrowse
|
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