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RNAi Experiment: Cenix:321-a9 Ace View of Cenix:321-a9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y39E4A.3
Description of "Y39E4A.3"  Y39E4A.3 is orthologous to the human gene MAPLE SYRUP URINE DISEASE, TYPE IA (MSUD, TYPE IA; E1-alpha subunit of branched-chain keto acid dehydrogenase; OMIM:248600), which when mutated leads to maple syrup urine disease; Y39E4A.3 protein is predicted to be mitochondrial.
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:12970399..12971516)
Transcript overlap: 513 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 469
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.801
Wormbase (BLAST) RNAi primary
External "Y39E4A.3" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  Y43F4A.4
KOG Annotation  Branched chain alpha-keto acid dehydrogenase complex, alpha subunit
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 112
Relative score: 0.249 (Best raw score= for Gene )
Specificity index: 0.199
Wormbase (BLAST) RNAi secondary
External "Y43F4A.4" Links  Wormbase NCBI Phenobank 1
Cenix:321-a9 Phenotypes Help with Phenotypes
Phenotype  WT
External Movies 
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Cenix:321-a9 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:321-a9 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y39E4A.3 Browse using GBrowse
Gene Graph
Gene Plot of Y43F4A.4 Browse using GBrowse
Gene Graph