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RNAi Experiment: Cenix:322-c11 Ace View of Cenix:322-c11
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F54C8.1
Description of "F54C8.1"  Associated GO Term : oxidoreductase activity
KOG Annotation  3-hydroxyacyl-CoA dehydrogenase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:9439710..9441010)
Transcript overlap: 897 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 834
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.886
Wormbase (BLAST) RNAi primary
External "F54C8.1" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F54C8.3 (emb-30)
Description of "F54C8.3"  emb-30 encodes an anaphase-promoting complex/cyclosome (APC/C) component orthologous to mammalian APC-4 and Schizosaccharomyces pombe Lid1; EMB-30 is required for the metaphase-to-anaphase transition during meiosis and mitosis, for establishing anterior-posterior polarity in the early embryo, and for proper localization of germline granules and the maternally provided PAR-2 and PAR-3 proteins.
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:9439710..9441010)
Transcript overlap: 171 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 107
Relative score: 0.128 (Best raw score= for Gene )
Specificity index: 0.114
Wormbase (BLAST) RNAi primary
External "F54C8.3" Links  Wormbase NCBI Phenobank 1 2
Cenix:322-c11 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:322-c11 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:322-c11 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F54C8.3 Browse using GBrowse
Gene Graph
Gene Plot of F54C8.1 Browse using GBrowse
Gene Graph