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RNAi Experiment: Cenix:322-c5 Ace View of Cenix:322-c5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  R10E11.2 (vha-2)
Description of "R10E11.2"  vha-2 encodes a 16-kDa proteolipid of the vacuolar-type H+-ATPase (V-ATPase) not required for embryonic viability; VHA-2 is 100% identical to VHA-3 with respect to amino acid sequence; vha-2 is located in a polycistronic region with vha-1 and it is expressed in the excretory cell, rectum, and a pair of cells posterior to the anus.
KOG Annotation  Vacuolar H+-ATPase V0 sector, subunits c/c'
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:9781923..9782837)
Transcript overlap: 689 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 647
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "R10E11.2" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  R10E11.8 (vha-1)
Description of "R10E11.8"  vha-1 encodes a 16-kDa proteolipid of the vacuolar-type H+-ATPase (V-ATPase) and is required for embryogenesis and for oocyte ovulation, based on RNAi analysis; expressed in the excretory cells and the rectum of adult animals as well as in a pair of cells posterior to the anus.
KOG Annotation  Vacuolar H+-ATPase V0 sector, subunits c/c'
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 30 nt Explain types of evidence for RNAi inhibition
External "R10E11.8" Links  Wormbase NCBI Phenobank 1
Cenix:322-c5 Phenotypes Help with Phenotypes
Adult  Sterile F0/Fertility Problems
Sterility/Impaired Fertility in F0
External Movies 
(Please note that RNAiDB is not
hosting these data.)
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Cenix:322-c5 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:322-c5 (PCR_reagent)
Remark  early embryonic: Sterility/Impaired Fertility in F0
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of R10E11.8 Browse using GBrowse
Gene Graph
Gene Plot of R10E11.2 Browse using GBrowse
Gene Graph