Link to Y119D3B.5Link to Y119D3B.19RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to ZC47.7geneMap Link to Y119D3B.3Link to ZC47.7RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y119D3B.19geneMap Link to Y119D3B.5RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentLink to Y119D3B.3geneMap Link to Y119D3B.3RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentLink to Y119D3B.5geneMap
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RNAi Experiment: Cenix:323-c11 Ace View of Cenix:323-c11
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y119D3B.19
Description of "Y119D3B.19"  This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:1256799..1258484)
Transcript overlap: 853 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 790
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.46
Wormbase (BLAST) RNAi primary
External "Y119D3B.19" Links  Wormbase NCBI Phenobank 1 2 3 4
Gene Inhibited  ZC47.7
Description of "ZC47.7"  This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
Evidence for Inhibition 
ePCR Status: Top85_percentile_ePCR (III:1265240..1266925)
Transcript overlap: 834 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 728
Relative score: 0.922 (Best raw score= for Gene )
Specificity index: 0.424
Wormbase (BLAST) RNAi primary
External "ZC47.7" Links  Wormbase NCBI Phenobank 1 2 3 4
Gene Inhibited  Y119D3B.5 (srz-8)
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:1256799..1258484)
Transcript overlap: 121 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 100
Specificity index: 0.058
Wormbase (BLAST) RNAi primary
External "Y119D3B.5" Links  Wormbase NCBI Phenobank 1 2 3 4
Gene Inhibited  Y119D3B.3 (srz-9)
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:1265240..1266925)
Transcript overlap: 121 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 100
Relative score: 0.127 (Best raw score= for Gene )
Specificity index: 0.058
Wormbase (BLAST) RNAi primary
External "Y119D3B.3" Links  Wormbase NCBI Phenobank 1 2 3 4
Cenix:323-c11 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:323-c11 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:323-c11 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y119D3B.19 Browse using GBrowse
Gene Graph
Gene Plot of Y119D3B.5 Browse using GBrowse
Gene Graph
Gene Plot of Y119D3B.3 Browse using GBrowse
Gene Graph
Gene Plot of ZC47.7 Browse using GBrowse
Gene Graph