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RNAi Experiment: Cenix:324-g3 Ace View of Cenix:324-g3
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y39A1A.8
Description of "Y39A1A.8"  Associated GO Term : molecular_function unknown
KOG Annotation  Multitransmembrane protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:10626099..10627760)
Transcript overlap: 538 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 399
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.742
Wormbase (BLAST) RNAi primary
External "Y39A1A.8" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y39A1A.23 (hpr-9)
Description of "Y39A1A.23"  Associated GO Term : regulation of cell cycle
KOG Annotation  Checkpoint 9-1-1 complex, RAD9 component
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:10626099..10627760)
Transcript overlap: 160 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 139
Relative score: 0.348 (Best raw score= for Gene )
Specificity index: 0.258
Wormbase (BLAST) RNAi primary
External "Y39A1A.23" Links  Wormbase NCBI Phenobank 1 2
Cenix:324-g3 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:324-g3 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:324-g3 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y39A1A.23 Browse using GBrowse
Gene Graph
Gene Plot of Y39A1A.8 Browse using GBrowse
Gene Graph