Link to Y39A3A.4RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y48G9A.9aLink to Y48G9A.9bRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
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RNAi Experiment: Cenix:328-f12 Ace View of Cenix:328-f12
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y39A3A.4
Description of "Y39A3A.4"  Associated GO Term : protein tyrosine phosphatase activity
KOG Annotation  Protein tyrosine phosphatase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:2072991..2074453)
Transcript overlap: 529 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 585
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.859
Wormbase (BLAST) RNAi primary
External "Y39A3A.4" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  Y48G9A.9
Description of "Y48G9A.9"  Associated GO Term : protein phosphatase activity
KOG Annotation  Protein tyrosine phosphatase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 96
Relative score: 0.164 (Best raw score= for Gene )
Specificity index: 0.141
Wormbase (BLAST) RNAi secondary
External "Y48G9A.9" Links  Wormbase NCBI Phenobank 1
Cenix:328-f12 Phenotypes Help with Phenotypes
Phenotype  WT
External Movies 
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Cenix:328-f12 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:328-f12 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y48G9A.9 Browse using GBrowse
Gene Graph
Gene Plot of Y39A3A.4 Browse using GBrowse
Gene Graph